NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000063

Scaffold Ga0210404_10000063


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000063 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84642
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (78.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011313Metagenome / Metatranscriptome292Y
F012137Metagenome / Metatranscriptome283Y
F018790Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000006326F012137GAGGMFRISIVDTPSRRTLVVEGTLIGPWVAELGTTSRNAGQDLGGRRLVVDLSDLTVISREGEDVIFDLMKKGATFSCGGVLTRHVLKQLACKKQQESSRR
Ga0210404_1000006328F018790GGAGMAKVIEFYVPKNFRNPFVRAAQSQRGKVIEFCSQAKKLVPARPAGGVLGLLETTETERSAVSE
Ga0210404_1000006385F011313GGAGGVSKTAAVVLAFLSLTLFPTPSKAQLIPSGNVYAGVAYADSVDVVNRLAFRGWDGSVEAFPLRRLSYIGIVLDGSGLYTKGAADSGTIQQYNVVVGPRLSMNYGKWRPFVHAMGGIQRTKSGGNTYHPTAFDLGAGVDRKLPFKNFSWRLQFDYVHTHLLSQNQNEYRGSTGIVWRF
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