NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000076

Scaffold Ga0210404_10000076


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000076 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74311
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (54.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011479Metagenome / Metatranscriptome290Y
F017116Metagenome242Y
F023557Metagenome209Y
F024510Metagenome205N
F029700Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000007615F029700AGGVPALVIPNKSKSLNIPVFQSRIPTSEELVVLDKPLLDATIEVGNLLKDCHAKWALAGDIGEILNGVNVQPDHLTILTSFAGCEEISRKLEEFQVEASRYVETQIKRKAEIESKPMPITIKSYASQFNVNGQTLNVHGDLRIKVGDWDWGDPIDYEPEDVYVVGVKVPVVPLELKIQLYRGLGWYDRVSKIHGAMARRHHKVG
Ga0210404_1000007634F017116AGGAGMAFDIVDIFEIISLVLILVAFAIFARLAIKGKNLGSFRFQLSIFMLIWVLSEIPHIFSTLGLIDTANYSDIGLYLHATSMGVFALFVGWRSIKFLTIHPTPPTGAMSVATKPPEGFKGGM
Ga0210404_1000007635F011479GAGMSKILGADTWKAINFFFDMKTIAREPEQFAALLDKVFGYTSIVLQKKIGETLLGKVGAVQQTSSNFDFRQILRLAKAKFPRQAIPEALGQ
Ga0210404_1000007650F023557GGAGMNSRAVGYELVVFVTQWGLMLLGFGVLTKFVAPLNLLNPSLSLDLYFDAAVKALIALILSVAWLFIWDRQVRLYFHRRAR
Ga0210404_1000007653F024510N/ALRLTIEEYGPWISNELDNQLRSTRTKAAKLVDEAKRAVSEAGSFYEDLGKKGDRDMATKKDAASYRAARLIGHGAHEAAARVKEIVIPNDTSWESLRIVKDSLSVASRSIRDLRDSTARELSGFYILDMRSFGGSLDRIAKSGDRLATFLEGEGAKLQRARTMTGIFESIKTARRELDEKATEMGAVNKELGRLNASESELTSKISQLETDSDLREVLDIEKELRKESRAFRAETLAHLQRPLRRLADLAQRGEYPLGSDEREALSAFVKSPYKSFLSKSTGEYLARILESMKKAIDSGKMGFKPKKTGRVSVQLNQLIGTPHLVEKQEKGRRLLARRRELLRRADCKDIYERRKALLSRIEETRLEELTVQEKMRSASSMTEAVNKRMIELLKQAEMKTREYVGKDVELEGASL
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