NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000191

Scaffold Ga0210404_10000191


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000191 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38346
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (77.27%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000916Metagenome / Metatranscriptome835Y
F002922Metagenome / Metatranscriptome520Y
F005205Metagenome / Metatranscriptome408N
F008075Metagenome / Metatranscriptome339N
F009595Metagenome315Y
F013400Metagenome / Metatranscriptome271N
F025702Metagenome / Metatranscriptome200N
F027474Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000019113F025702N/ALQTPARLKDLEHSINEDLSKANLPEIKISGFKLPEQALELTFERETVTGVIRDKIWEIINSHYKKLMNELGLLEG
Ga0210404_1000019116F013400AGGAGMADATLLTGMWIVAVLQLILEAGIVLYAYRLTRLTGSFRAWTMIILAFILTTASSLFGIVLLLINPDLIAGLVQSISLPTLIVSYAVSIATSLLFFFGVFDLVRRFRLAAKKPPGANAST
Ga0210404_1000019119F008075GGAMQTLKTLLSYSLETYADKPSELHRELSRVFGSGATTLERMITKELFQRLSLRYSNELDFETSVNLARRDMILSERGNN
Ga0210404_1000019120F009595GAGGLRSDIIETFQGTLVRCFSETIENLFGRPVKEQLMRILAEHKIPRAEIGARFDDVARVLGEVFGSSSRLLVFKTVVGLYEEYSVRASFGFYDSLKDQILYLREKVLADIIKPRHSPTIDDSIYITGPRPIA
Ga0210404_1000019126F027474N/AMTDQAPNWRIHVKKGSYEVEVEGPNPERVEKMFDELVKKYMKKIASS
Ga0210404_1000019130F005205N/AMSTVNVKTALQAPKHVRAILSGGLGVFSSLLAIGWALWAYNLPSAVNVNSSQSQNLMLAQLVIAFILLLGSGLMLARFTLPGGIINILGALGTFLIGVYFSSGVADAARSKDLTALPLKFSGVYTGTVSLATDRIVSTFLIVPVFPIAALLLISGLGALATYRSGKRATIHL
Ga0210404_1000019137F000916GAGMATQTQQKRTRSLAQRYEMLRKTLAHYLLLQVGTFVTAAGFDAIAPAMNILTDMKANLKVQDIKAKGHQNGVEALSQNLAESMGETFDSDYEVERGDASQTVKLDRCGCIESVVSQAEAYGLTKVQARSIFCGTCMSSYKKAAESLEVGFKGRLRGEYGCSMSFSKK
Ga0210404_100001919F002922GAGGMTTVALQIDEVIGLLGNAGFLWALLLGTWGALSYSFVRHRKHGPKVGPSQAAGAVNFSLTKPRLSEEEIFRILTTTETNIQIVRICESPKTAREISKGLGDVYPGHKEKGFPAEKLGEHLANLERLGAVKFNGEKWAASDVGMKMVRKYFG
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