NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000428

Scaffold Ga0210404_10000428


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000428 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22551
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005236Metagenome / Metatranscriptome407Y
F023303Metagenome210N
F030713Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000042811F023303N/ALSFSQKKFPLNSGLLLIIALIGTLAISVTSFLLIVLGRGGPSLAGYGVGSMSLFAFLLTIQVLHGKTESKDDFVKKGAVRTAIATSFTVAYLMLLALGLDAGLGLNLNNGILANFHIVYIFTIGTYFVTASLERIVDLVKGKSSLFG
Ga0210404_100004285F005236N/AMGKILIGLAILILPVAVSLTLIFSEILTTVGVVVSLGGSVFVFFCGIYAGFLGIKYERLQQQFESFVNPLRIRSNAVNLIKAICPIDHDQVVFVHVSPHRDDARPDGLDIFLGSCGHEVHRGEIEIAQIADSAPN
Ga0210404_100004288F030713GAGMNEKKRLPPWEEAKLVFKMQEETRKRKLLEEDMQRRRGRAKRVGPNTSDELEENRKRLRALQDRIEHDVDR
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