NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000467

Scaffold Ga0210404_10000467


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000467 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20943
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (50.00%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004601Metagenome / Metatranscriptome431Y
F014965Metagenome / Metatranscriptome258Y
F046289Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000046710F046289N/AVQDSVEVWDAPSTILVGVRVQVRPVAGLIEDVRATVPVKPLIGATVIVEVAAAPAKAVTAVGLAATEKSVTV
Ga0210404_1000046712F014965N/AVLDPEPVTLVGVRVQVKPVAGDTAEVRLTTPVKPFSAVTVIVEVPEAPARIVTVVGLAAMVKSCTV
Ga0210404_1000046713F014965N/AVQESVLVPEPVTLVGVRVQVRPVAGEMVEDNETTPLNPCRAVTVMVEVAAVPAFAAMDVGLAAIVKSCTV
Ga0210404_1000046715F014965GAGVLVPEPVTLVGVRVQVKPVAGETVAVRETIPLNPFCAVTVTVEVPAAPARIVTAVGLAAIVKSCTV
Ga0210404_1000046716F014965GGAGMLVGVRVQVRPVAGDTVAVKLTTPLKPCNAVTVIVEVPEAPARIVTLDGLAAIVKSCTV
Ga0210404_1000046717F014965GAGVHDNVLVPEPVTLVGVRVQVKPVAGETVAVRETIPLNPFRAVTVIVEVPAVPAFTLTVVGLAAIVKSWTV
Ga0210404_1000046719F014965GAGGVTLVGVRVQVKPVAGETVAVRETIPLNPLRAVTVTVEVPEAPARIVTVVGLAAIVKSWTVKVTVAE
Ga0210404_1000046720F014965N/AVQDKVDVPDPVTLVGVRVHVRPVAGDTVAARLTVPLKPLRAVTVTVEVPEAPARIVTVVGLAAIVKS
Ga0210404_1000046721F014965N/AVTLVGVRVQVKPVAGETVAVRLTTPLKPCRPVTVIVDVPEAPARIVTVVGLAAIVKSWTV
Ga0210404_1000046722F014965N/AVTVYAPALPVHESVEVPEPVTLVGVRVQVKPVAGDTVAVRLTTPLKPWSAVTVIVDVPAVPAITVTLVGLAAMVKSCTV
Ga0210404_1000046723F014965N/AVHDRVLVPEPVTLVGARAQVRPVAGETVDDNDTTPAKPWRPVTVIVDVAAVPALTLTAVGLAEIVKSCTA
Ga0210404_1000046724F004601GAGMLLGVRVQVRPATGAIEEVRATVPVKPLSGATVMVEVAAVPALTVRAVGLAATVKSLMVTVTVAE
Ga0210404_1000046728F014965GGAMLAGVSVQVRPVVGDIVDTRLTVPLKPCRAVTVIVDVPAVPATTVTLVGLAAIVKSCTVKVTVAE
Ga0210404_1000046729F014965AGCAGVHDSVLVPDPVTLVGVKVQVMPVAGDEVAVRDTTPANPLTAVTVIVEVPAWFTLTVTLVGLAAIVKF
Ga0210404_1000046737F014965N/AVLVPDPVTLVGVRVQVRPVAGETVAESETTPANPWRPVTVIVEVPEAPARIVTLVGLAAIVKSWTM
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