NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000821

Scaffold Ga0210404_10000821


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000821 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14459
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002266Metagenome / Metatranscriptome576Y
F007071Metagenome / Metatranscriptome358Y
F007642Metagenome347Y
F015713Metagenome252N

Sequences

Protein IDFamilyRBSSequence
Ga0210404_100008211F002266N/AEFIHDMGLVSVLGGNELPSLISAILGKPWKPSAKGFTGWLDWWSIEISGQSVAQVSREIEGRNDILASRIFKRTKTFVSNRLWPILEPIVEHRQDPEAKRRTLSDLDLKILETIQGEGSIRTDRLRKKLKLEAKENNSKFHSSLNNLESYGLIVGVEDPNPEKHLHSNIWQTWGNRTHTGKSHTNLPYNEALSKLFVKTVDACVLAREDQIPRWFRWSSDMEAAKEQLLLDGAILKSGQYIVSAKV
Ga0210404_1000082111F007071N/AMSGLSLRLTEIRSFLLPVSQFVAWPIFFLLTSAISQQPAYFLALLLVLAADVIDKSPRNRGLFRDLVAGGATTLLALFLNDLDGVAIGAIVAVVATSRLVQKLN
Ga0210404_1000082116F007642N/AMPSLTAREAVTVQEKPLAEVLVEGELSPFEHEALYRVLRKCFRLEHPSYGPLVDEDLTTRVNVTFHYPYVTTIFTDVLKENWRDLKELLRQVRYRRGKAGAAVTFTFIGDGRRLVFRSGDLEEKELSSALDQIGHLTGILAQMLRPGTMEKSLELVEAHYDKKSDRWHEFKGFGSSDRTDSYVFDESVFRWVRS
Ga0210404_100008217F015713GAGMKFSWRDVAEDVEKHAHKLAEDIFALEPDVSEEVDLKALFERILGKEDWTDKLAAHLGRIKGLFHRPQKETELPEDLKQLIPNMRDVESAYVDITSGYKDFIKAVWVAQHERQWRE
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