NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10001634

Scaffold Ga0210404_10001634


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10001634 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9508
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006340Metagenome / Metatranscriptome375Y
F007853Metagenome343Y
F029079Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0210404_100016343F029079GGAMPQRSEELTQSSLAEILGKMSEKGYALNFDVTLELATPTLKVGTVRVHGKVESAALKKK
Ga0210404_100016344F006340N/AMSEPFIGIGGFPRLRGTSTTKYVALVAVLTALFTAYGYISSIELRPVTRSLDLFFLLPAFFAILVSLTGKKWGGTILGVIIGLVFLGTPSAAGNFSPHITASVIVNGLVFDLYLQRSGSSLLDPSRKRLVIAGTLGNFAMAPTGLLVLQAVGGPSSAVIWTIALVGDTLVGAAGAFFGTIVVERVRGVQARRILEAKSAVRVRV
Ga0210404_100016346F007853GGALESKLEKALDDAWSKVNIALDNASKPSANFAMELWFAAEALEYSSLLFNLTYGLEDLKPAVKPRKHEEALVLVKDSVELLKLAREGRQKSATEAYVNLRTAADYLKTAHLDQVKKFTKKRDSV
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