NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10002427

Scaffold Ga0210404_10002427


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10002427 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7684
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006466Metagenome372Y
F013280Metagenome / Metatranscriptome272Y
F075877Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0210404_100024272F075877GGALKGQLIFRPGIGNGDGFDVLDPKEEERVLHRIENRGSFSTLDLAIQLHYSVNDTGQHRVREDHYILRLVFQPGRVEVLVHHLKGVRRVEPDELIKIIIQELNVELTRDRYGQIELETINI
Ga0210404_100024275F013280N/ALNTIRLLFWSAIAYAVLLVLIRGIFPSESTPTISLTGIPLVVIVVMIARDLSRRSTSPTIRKATPTTARFRGSLVQFLSGQFRVAASASSSYFENVVRARLKELLTAKVALETGLERETVRKLLSDPSRGPELLKDESLYRTLYGPAPQTRIARMNMIGDTIDMIGAWAV
Ga0210404_100024278F006466AGGGGGLRNRTAVWLASVSLLLLIVWGKIAGDINGLPGPDSALLLFQFMSVIFLMEASTTILTFDSAVNPLAGKNDDLSARARMQLVKWEQVQLFSLGKLTVASFGLSLGLLILGSLVSVSFNQIAFSGVLVLAAVVAIFILLTYRREPEERKRSLD
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