NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10003944

Scaffold Ga0210404_10003944


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10003944 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6000
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003435Metagenome / Metatranscriptome487Y
F011329Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_100039442F011329GGGGGMTHGFSIEFCGNLEACRTEARILRPSAQPDDALVALVYETSHGFVVSYVGSAMANHTLPGLDAAIAEARAELLHYTNRRGENPPSGITRPGLSLWLTERDDETVMGIPLK
Ga0210404_100039446F003435GGAGVGDANPAVSVGRSSSTLDLDMRLTPDNPALRRWRLWVGAVLVAEICWFALLHPRIVGNFRTVLALALLPLTVVGYVYLMAAVSAYLADREWDFRLRQMIVIMVGLSVGCFVFAVLWLAKVHFEGELGGRYVV
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