NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10006439

Scaffold Ga0210404_10006439


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10006439 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4730
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008315Metagenome / Metatranscriptome335Y
F023654Metagenome / Metatranscriptome209Y
F060173Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_100064391F023654N/ANGQGIRAAFKLRNNLYFVKERGMYVTATDGVNEPSLWGVEEVSNKVGTPSAHGVGAGEEWVVIAGRSGLYLFDGSEPVKLSQEIQPTWDAINWQYGQRIWVQVDTEHKRILVGVPMGSATQPNQILMLDYTEGFQDPLVAVYTAPERARKWARWMIAANSCGLIERSTGIAQIFLGTNSGNSKIYALTTGQFSDDGAPIHSYYTTAYLSSTNMSGRNLFGYLTGYVQGAGSLALSAFSPGDVTVTALGSWTLGSPNARDLEQFTNVLAERISFQFGTNAVSSWFSLTKLVPWAKPDPFAIVRGTN
Ga0210404_100064393F060173N/AMTGRRYYLTTLGDWQRQSARFANSHWLALTDAAEVADESTPVVALIEADEGAHLALEDDDAFEALPHPMSQLPISESAQAALARYGVAPGATTFDASEAIARLHPLLRHRIF
Ga0210404_100064396F008315GAGGMNTLVDPYWWTFALASLVQFTMFVRWLYRRIRNDEINRIFIQDMATYHLPRIYELLDKLCEKQEIAHSPQSPIRWMDMGTRRR
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