NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10027559

Scaffold Ga0210404_10027559


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10027559 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2512
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002368Metagenome / Metatranscriptome566Y
F034123Metagenome175N
F035684Metagenome171N

Sequences

Protein IDFamilyRBSSequence
Ga0210404_100275592F002368N/AMAIQLTPTKIKGSKYLLIPKDLARLLEIEDKSILNLTIEESETGQRLVYSIRERPHHLADNQN
Ga0210404_100275593F035684GAGMGLLPEFLTLLGIEIFAAMSLVSVLLDRDIASSVQWLFQGAAGLGLGQLVVTEGFGTSSVIDASRFWISIFYLILSVCSAAGLNVYLAAVRRKTAIASVFSGTITTPTVSVSVLFVSSYLSGVDVGLTPLTIVILIVPALLVGLCTYGFLVKMSKRVGKSAVPELPAPVSTPVETPKTYESLDLKDILGKWEESQKKDPVDRR
Ga0210404_100275594F034123GGTGGLKGMRGLFDLGGKNVLRLGLLVFSTLLIVGGSVFFYDRLVYERALSVGGVITGSGSTTQTGLNPAPGTILILSVSAVLISLSVFGFLREMFRGRSNRKALARESSPTAAVSLPLEIGPPLQVPSIKRDWEEAPKKDESKH
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