NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10201510

Scaffold Ga0210404_10201510


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10201510 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1067
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004601Metagenome / Metatranscriptome431Y
F014965Metagenome / Metatranscriptome258Y
F046289Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_102015101F004601GGAGVHVNPVAGEIELVRATVPVNPFTGATVIVEVAAVPAVVVTAVGDAATVRSRTV
Ga0210404_102015102F046289N/AVQDRVEVWDAPSTILVGVRVQVRPVAGLIEDVRATVPVKPLIGATVMVEVAAAPARAVTAVGLAATEKSVTV
Ga0210404_102015104F014965N/AVLDPEPVTLVGVRVQVKPVAGDTAEVRLTTPVKPFRAVTVIVEVPEAPARIVTVVGLAAMVKS
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