NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10309008

Scaffold Ga0210404_10309008


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10309008 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)871
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015194Metagenome / Metatranscriptome256Y
F053439Metagenome / Metatranscriptome141Y
F071447Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_103090081F071447N/ASVEADLKKHREKFFRIGRIERGESGKARVSYSGSLQM
Ga0210404_103090082F015194AGGAGGMNSTRTSLDLLALRVQELEASNRRWKLVNALLALSAVSVALMGAKSADRIEPPMVRASTVEAQEFILKDEAGHVYARLSLNPSAPAMKTRNGRMYFMSNQGIPIPGQAALQFYDDKGEVLWTAPSKDHFVPVK
Ga0210404_103090083F053439N/ASILEEVGHAHHEAVWMVSLMIEQFTVELRWLHKLRRELPLRAAARRPSYA
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