NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206679_10089136

Scaffold Ga0206679_10089136


Overview

Basic Information
Taxon OID3300021089 Open in IMG/M
Scaffold IDGa0206679_10089136 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1805
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011254Metagenome / Metatranscriptome293Y
F087733Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0206679_100891362F087733N/AMKWLLIIYFFIGGPDGGWYEGERTFYETKQECIEYRDFFNNMPKPGTLMARCKRADPVSK
Ga0206679_100891363F011254N/AMRVDIKTKKPIDKVTIINLDKELLPKLGTIFIGENWHKLLIPCNRHNIIDITISGESIKHCLNSGSETEQGYEIWLHGNLAEYFSRISECIAQDDLLHHKELDSKYLHTVSWNEKVEGDFIPTHVKQFFATGEGPYWYHKGDFFNLPYITYNGPNVDTDINLDEDLQYTDSKFYGEGQCKSLKPQPVLPIIEIDEIKNKKLRETMQQFGFTEILQMQYVELQPNSVIPVHRDDFTYEDARHIVNGPTQLYCILSGSSKDIKFKFKNAGLIDTSKPIFINNQKFIHSLVYTGEKPRGVLLAYGISSFTSSH
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