NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206679_10091049

Scaffold Ga0206679_10091049


Overview

Basic Information
Taxon OID3300021089 Open in IMG/M
Scaffold IDGa0206679_10091049 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1783
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037425Metagenome / Metatranscriptome168Y
F039346Metagenome / Metatranscriptome164Y
F044731Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0206679_100910492F039346N/AMLTSFVITLIECLEIAFITLLISQTQVKKSTTIIYGSLGLIGGLLSAFYLHDILENYEWLMYAILSFLFFYLFANNKEITKHIRQHVDDIRHSSSTVLFLTAFFIYGRESFEIFSNLFLNPNASWIAAGCAVAVAVAIFVFAKDSKLKKYIFRYGYWAYIAFALWFGYEALEHLHIL
Ga0206679_100910494F044731AGGAGMIFEDIYRKYEHLTIELIENEESSPLEVAGAMMGQAMKLYKMSLSREDFDSLMTIITHASDLNDRFDDDGFSSGTVH
Ga0206679_100910495F037425GGAMEKKIVKPHYKWDGFRQQYNGIIKNLLNNVDICNRRYAEEGEEGYLVQRKAYIKEIEELKIFIKQKELELGYYTNEEGEK
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