Scaffold Ga0194133_10000454

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194133_10000454

Scaffold Ga0194133_10000454

Overview

Basic Information
Taxon OID	3300021091 Open in IMG/M
Scaffold ID	Ga0194133_10000454 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	83890
Total Scaffold Genes	91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (6.59%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-4.8915	Long. (^o)	29.586	Alt. (m)		Depth (m)	40
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006421	Metagenome	373	Y
F078576	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194133_1000045475	F006421	N/A	MPYGYPVLTPAYGLGSYGRTGPALTISSPRTRIGSQNRIYAYYKRRGQGQEYEQYLINALGLKYLPKVNPWTYI
Ga0194133_1000045478	F078576	GGA	MNNRRLQILYQKTDFNNHKICQLNCIFKCCKCKKNNTILTELNTPVQSCLFCGTPNHIKK

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