NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194133_10028921

Scaffold Ga0194133_10028921


Overview

Basic Information
Taxon OID3300021091 Open in IMG/M
Scaffold IDGa0194133_10028921 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5222
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0194133_100289212F008808AGAAGGMSKNIPPCPHCGKCFKNVFEAVDHILEDDEEFDPALILPDGARLMIGSLLRCLYKYAHNPDQVKTITQSTYMTLFTAETRPEEIKNVIEEMIIESQMMEIDSELKNLLEKGE
Ga0194133_100289216F001531GGALDWNNIEKWDYIVTAVASDYHKKFNMVELEDIRQSLYQWFAEHPNKLKDWEAIGERDAKNLIYRSLRNQALDYCQRWKAKSIGYDISDVHYYDSEIVEILLPPVLRGEYGVTHKLNLGFIGRPSAPAEGGNLTIMMLEVDAAYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLVNKIGGYKPYRDVDSTGEEPEDECQSPVE
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