NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194122_10076772

Scaffold Ga0194122_10076772


Overview

Basic Information
Taxon OID3300021092 Open in IMG/M
Scaffold IDGa0194122_10076772 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1905
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045066Metagenome153N
F075787Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0194122_100767721F045066N/ALLKGILIYKYARRRANKKRDRQDAREDACEQEALEQEMLNGSWGEEICDYCGRTNEEHLEDEEPCS
Ga0194122_100767724F075787GAGVIKIGSVSKHELELVNRLVHHCEPEEHLAKGVLLTTKNGKRIWQVGALTTNMTVVGDDADFEGSYIVFGRFIMAAHSQCGFGGTAEITIDNNEITATVDGGTTTMITGTKTYPPREFNEPSEVTALIPLGEYNRIFGNITTIPTGCTDWESLFDYPFSAIIKISVGKVSVQSRWPKLKTPEIVMSCAAETTGEGKIVLPDQAIGYMSLCIHPKDTEFIKISFAAKDPSYARFESGPVSLVVEKTNNFSTQLFERFTKYLADNSFDFQVAPDGVLVVNVEKTPIRVQLFD
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