NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194122_10325901

Scaffold Ga0194122_10325901


Overview

Basic Information
Taxon OID3300021092 Open in IMG/M
Scaffold IDGa0194122_10325901 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)785
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045598Metagenome / Metatranscriptome152Y
F097205Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0194122_103259011F045598N/AMATFSLGTSGNTPGAPGVYINEQPGKAANANLADFSTVYMLVETDDSVPVTRFPYNTPTAITSLNDYKALIRVGNTTVPEGRIPLLSYNCVNEFFQNAQVGDLRVVRVGTPDQIVEI
Ga0194122_103259012F097205N/AKLGYLYFTNSLDYRQVLEENPQWTVTELPPLGAQLRISPAAGTTGTPGGLSQGSFVFGLPTGQEQINVFPFETEESYNIALNRYTLQGVIDREEINGITFDSTPAITGLQNG
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