NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194123_10220150

Scaffold Ga0194123_10220150


Overview

Basic Information
Taxon OID3300021093 Open in IMG/M
Scaffold IDGa0194123_10220150 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)956
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-5.5789Long. (o)29.514Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019122Metagenome / Metatranscriptome231N

Sequences

Protein IDFamilyRBSSequence
Ga0194123_102201501F019122N/AMSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFREGFISCRPGFVQKDYNICVTITADNEEITCDQTNVTADGWSEECYGPESLTGVFQCAMQYISDDGNTFIVMLISGKVWLYNCAANQVQLLSITPDLENPSNLLDGWMVQAENFVIIQDGFSKPLIFNGTSLRRAKDDEIKSGRVMAYLNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLN

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