Scaffold Ga0214162_1006047

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214162_1006047

Scaffold Ga0214162_1006047

Overview

Basic Information
Taxon OID	3300021108 Open in IMG/M
Scaffold ID	Ga0214162_1006047 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2342
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, WI
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044498	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214162_10060471	F044498	AGGA	MQTDLNKFSYVANNERVLLLSRYSTNCSLTELLELQSPMAEIQSETVPILSFLNGAIQRPLSYEQHIMNQKLMCAKKKFEKSCLLAYRVYCDMELKHNLLVKQYCNDEMILCSKAHDHHGYHCKPSNENHSTFEYDVKKTCETNIVFDGLQDLRCIMAPDYYPDGSHYIFPTPILSCLDSVNEEDVRLLLSLRH

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