Basic Information | |
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Taxon OID | 3300021112 Open in IMG/M |
Scaffold ID | Ga0214186_102123 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1629 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013499 | Metagenome / Metatranscriptome | 270 | N |
F016116 | Metagenome / Metatranscriptome | 249 | N |
F083681 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214186_1021233 | F016116 | GAG | LSLTNKTMVEKLAKHERLALYNLTEREIDQLEEELVKQFPKEQFAETYIEMWQIYRDTKAIQIYNLIEAKYPGSHNDEKRAGIWFEIATLFPHRLHELVKL |
Ga0214186_1021234 | F013499 | N/A | MSETLKDIRTTVSGIKGLVMMLQAYQRDLAGKGEPDPSEGSLETARLAIDQLKEKIEAIVGPEEPTGAEGFEVEVHESEDQPQTE |
Ga0214186_1021235 | F083681 | N/A | MNEQEGIEELDRLKRVASIRKDMCKVIQLLGYRVKVLKLQLALLPSEEKNLIRFQLDNALDETIKMVSKISHNFQKEERKLISELFHQ |
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