NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214205_100566

Scaffold Ga0214205_100566


Overview

Basic Information
Taxon OID3300021118 Open in IMG/M
Scaffold IDGa0214205_100566 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5525
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026196Metagenome / Metatranscriptome198N
F045530Metagenome / Metatranscriptome152Y
F061527Metagenome / Metatranscriptome131N
F066480Metagenome / Metatranscriptome126N
F076862Metagenome / Metatranscriptome117N
F100357Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214205_10056610F076862N/AMSDPSRDTTVEEITKGIRTLDTDNQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMVKNLLESNSHKTHTIARQYGRKHPPLTGPLARMLMDLADLEDLVSCKEIEEMKEVIEDLDNW
Ga0214205_1005663F026196N/AMWPTRMSEPSNSCNNITFSCEKNTIGLNQPNGKYFTSLGLWQRRDKLVEELIDLINATKVNKSEADSIKIQEYSKIQSIIEEQREIDPDWHLVIRQQEEDCLRVSHYDCYCNSGNDSKCSHNTVPLVKPRTLRDVTEIVKSIQETMNAINTNISFDENTGTMMKLYFFIKELRRVEPNRLPCLREVSRNPSKESKA
Ga0214205_1005665F045530N/AMIKSITEKLEFLNSMEEFYQKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMAHMSKTGLIKIYKSKEQIKKVYNTAITEEGTRGHVDEEGPPRKIFSGIYTRQKIQLN
Ga0214205_1005666F100357N/AMDPHSVKLLQNRIMLKFFTAKLKFVDTNCILCKKIVDTIAIEKTKETQEMDLDLLEKKTKALHVRLIIKRQTLIAGLKLWYQMPIKIYNEEELLRVRRVIKSVIKLTRRAEEMLKREVIP
Ga0214205_1005668F061527N/AMSDYFEQAFSEILSAIKRLTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIREKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGESNPKSKYVQLKLLHRMLEDFENNSTFSYWKDHVILGDRAVRETDG
Ga0214205_1005669F066480N/AMDIFKEREDQVVSKLLFIQGGQPIYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQMNVFSKEEKVLQELLKYILERMMSCLDTENKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.