NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214199_1001921

Scaffold Ga0214199_1001921


Overview

Basic Information
Taxon OID3300021124 Open in IMG/M
Scaffold IDGa0214199_1001921 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 04OCT2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3360
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027088Metagenome / Metatranscriptome195N
F082060Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0214199_100192110F082060N/AMIKNWKQYAEHYGYGLVASCWNAGISALYAAFGQSAGATVLKDVPQPTEHEILTIFLGACALEALAYFKSNPLPVIIDEKTNPTSTPSS
Ga0214199_100192111F027088N/AMKKLLILALLALPLISKAQLVQSPEYSWRVQICDLTYNTNQQLTACPVTVFYQSTITNGGAFVSNVQSVPQTLSVDLVAQAASTVVYNGTTYTYGQALGIMNAIFAQERAAELAKASSVSAPQTTQNLSAPATTPNSK
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