NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214211_1008248

Scaffold Ga0214211_1008248


Overview

Basic Information
Taxon OID3300021125 Open in IMG/M
Scaffold IDGa0214211_1008248 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1066
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007918Metagenome / Metatranscriptome342Y
F010534Metagenome / Metatranscriptome302N

Sequences

Protein IDFamilyRBSSequence
Ga0214211_10082482F010534AGAAGGMSDKVGEKQEAIMNLIDQQIKGALKDQASRLEILQDRIKDAIDIGTTEHSQGIKQVMLFVTKAHVQAWITSLKHQIDIAGDCEICDLEKILGEESLEIAEAVKIALSNRNEETRSRVLRELLEKTTTKIEALSVRVSQAPQP
Ga0214211_10082483F007918N/AMCDTILEESDPFLNLELDIEAGINQELSSIKQELLSILTKVETLTEAMNRVILKEESRREQFKILCSSIDYLFGENIGMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVATKPDLESMKTEMRRVLSQQRIEKLQTNPQQEEQRPQKG
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