NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214193_1000420

Scaffold Ga0214193_1000420


Overview

Basic Information
Taxon OID3300021127 Open in IMG/M
Scaffold IDGa0214193_1000420 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9943
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008619Metagenome330Y
F074309Metagenome119N
F083692Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0214193_10004201F008619AGGAGMAGFQNIVEIQQKMNVNNRRTVGQQVSRSGQMTVAQYLTTVPWVFTITPHNFLYYPQVRDVIQAIDNLDRQLPDYITFQSTNLSWFTAMRGTATTASLNGTPTPNSQTININSNGTLLAGDFISINGFVYKVTADSSGSVININRPLIGAPASTAPVLLGNNCSFYVVAEQLPTYTLNPMTNGAWVEWSSPFVFREYITAS
Ga0214193_100042010F083692AGGAMIQIDGKTVDLTNPQTWGNSIEIKPNGFIEQTKDNVTTLVQPIPQPLKEAK
Ga0214193_10004205F074309GGAMAVFNKNSLSQISGFDNQILSGELVWNQKAFWNLFITNDAGVLPLTGATIDAQIIRRLLTNVIDTRNGLTFTIGDYNPTPTPISLTITNINYTNGSFTLVMDDSAWGLASSDPGLDIADPNGIGYSGRIKISFPANGSTPAEDIIIFLFFIVRSDGIVVE
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