NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1000003

Scaffold Ga0214206_1000003


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1000003 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)81658
Total Scaffold Genes116 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)97 (83.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009065Metagenome / Metatranscriptome323Y
F032163Metagenome / Metatranscriptome180Y
F062705Metagenome / Metatranscriptome130Y
F068486Metagenome / Metatranscriptome124Y
F096495Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0214206_100000314F032163N/AMTDDIDKLFEDLDAYYPNSKRKRKEKVIKAPEVEPDAAWDIKPYKKTLPNGREVEMFTIGALAGALGRPVITIRTWIKEGYLPASPYRLPAKKNSKGEDHQGRRLYSRAMVEAVIKLFDSAGLLHTKRIEWSLHRQLSNEIAEAWSSIRAEETNAN
Ga0214206_100000323F062705GGAGMKGYAVSDTRLVQVFLSPSQTPGPGIFEVSADDAGGIYCTCPGYKGRKTCKHTRFVQARIDSNNGTYPLEISSRATKEDATRAKESNDKFRDFVIRFGRIEVY
Ga0214206_100000366F068486AGGAGMASTKKPTDVTGRAREEALAANAEVQAERANEMSMASVTAAAKLSEEVIDARVPDRQTVIVDEVITVGNPDNDAVEIRVIETIENMTLGAGNNYNFKAGQRYTVTKQVAQHLKEKGYLANTL
Ga0214206_100000370F096495AGGAMALISGKEVKKGPKQLPANPKMWNMVVAQARSRFSTYPSPAAAHWVHAKYASLGGKFVTSKKEIDPRFRDYVQEEKEKQEESAKKKVTKPVGQGNIRGERFR
Ga0214206_100000373F009065GAGGLPVFGKKNEAWTKPFSERVAKRVAKIPTAELEMWIDQSLYEIGRCMSSYSKNRETVYLTEALTGAEALHAVVDELNSRTTRVK
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