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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021131 Open in IMG/M |
| Scaffold ID | Ga0214206_1000021 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 40011 |
| Total Scaffold Genes | 67 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 58 (86.57%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F003007 | Metagenome / Metatranscriptome | 513 | Y |
| F004695 | Metagenome | 427 | Y |
| F015330 | Metagenome / Metatranscriptome | 255 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214206_100002137 | F015330 | AGGA | VDTVKETKKAIELATGKRTPKAKSVVNNVTEYGALFNRLNEERLAKGLPPLKTAMEVLIDAMQSDELDMKDKARIADKLAPFESSRAPIISIEHVQNVQKDEEEDAEQALENFLESLKKV |
| Ga0214206_100002141 | F001059 | AGGA | MATFDIEALKADLPTAKELAQFVYDKTQIALDLVGKPKEEQYLVAKNALEGKKIPAEFLTDENPYIDRREMIPVDELKPVPPRSTDLPPESSRIHFFGATNMPHPLDPQSNRKVQINFWKYDNGIITYQVAGPVEQVAEGSRINKFGQTQPEKYTWIDPRTEEIVLRRQDGSFTEKGRGIYSFCIGEKGAGIWTLIDKDIISFTEKNIANPWA |
| Ga0214206_100002144 | F004695 | AGGA | MLDKQNIVIDNLTSPTGHRGIVEQVAHEAYVKMVDYLRLTQSKNTYNRFTDYHYLQIPVSNSTEPVRGIDYIAPIVTPGIDYATAVITKCLMPDGQVNFEFNRFTEDDAIGAKQSTDMVKYFINDKNDAYAIIRDWAQDALLHKNGIVMVMPIRESITMYKEVEGTRDQLRAFEIQAADSGLTTKRQNMRRVDVNLQGAMAEMMNPPQEEEQGEGPESQGEELNEALKNNYIYKAKYKLTGYSTNIKIKHVAQHYFVCNPTVPKIADQDFVGFYDPMTIHEAKVMYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTVWLRKDIDGDGEEEIVELCYSGSYVLYAKEVDFIPLANMNPKPLVGNFFGYSLGERLVPMQEYATSVRRAELAFALQASTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPNKHVWEPQPLQGNLGYVQSSMERFDSEKMAMIGMTSPGDTLNPEVMKDGNSGFKLQTAMGPNQLIQDEMVKNCAIALKDVVYLVWKTMIQYSDDYNIQQLAHACSENAGGFLDAMAVENYQFIDRKMISLDLALGFMSEENRLTRQQLITAAQQQFGQAMMMVPPQLPEMFTKLRLPYEDTLRSLGVKHIDAYLPTLDEWTKIGQFKSQQPPSAQDEEMKAKTQAQLAKAQETMANTAFIKKKTDDIDTDNMFEALAASRDKLRAVQVD |
| Ga0214206_100002148 | F000857 | AGGAG | MEKYESDQVNEDYYLKGNLEAGVDGVFRQNDKLFNEVKSGTWSQTFKTPNLDYKVGAVDGERYVQYTQHNVEAIKADCKQKREFYAIHGTDNPFFAGTFHAMELPKCFAHEISSKWFNNRPWELIKKEKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTR |
| Ga0214206_100002165 | F003007 | N/A | MYKEGRQFVVDAKKELDGVVKDVKGIQKDAKGVWGFLTGLFGGVKEENQQNIVEKPVKKVKQKAPEFDENQIYAQVADALTKFFHAYNGLQAYKMEQEASALTVGDEEGQDIAIKLVIADLQMEKLNEEMREYMVYHVPQEMKNLYSRVNDMIGHIANKQQLARKEKLDAKRKLEWQRRQVIDRLRNRVMVAIATSLVILWAWLMILTMIPSTSS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |