NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1000060

Scaffold Ga0214206_1000060


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1000060 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)29427
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (20.97%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058734Metagenome / Metatranscriptome134Y
F078044Metagenome116N
F079412Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0214206_100006019F079412AGGVVIFKPNKLIRKAYPKINWDTLSLVYSAILDPVYKAKKKRNFVIRIRSVKKGRWNWYNYDSKGGYFVIVPGLRIGQFHRVIIHEFRHFVQDKILHIPMTSDYEKLYFRHPLEIDARHFEYNGLHFVRRLYNRIEKQKKVFKKLNKYKG
Ga0214206_100006031F078044N/AMRKYIKPALYIVSIGTFVFALTGCASISPKVVIDGVLGHYPHFDSNEYNRAVNIEIEAKSLSKDVNNVDVFVSDVENFKLYVEGRPYNERIVKETDLLLKVTKELQARLGKGKPSPAYISIKCDNIVELADNIRKSIGIEKL
Ga0214206_100006059F058734N/AMTLTIIDNIKEFTAAEQKALYNEGADIATGIYYVTADAEHFTVQGREVIPDLPALRSLSQSANISWIITNFRGNKVAFGSVTSA

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