Scaffold Ga0214206

Basic Information
Taxon OID	3300021131 Open in IMG/M
Scaffold ID	Ga0214206_1000151 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021131 Open in IMG/M

Scaffold ID

Ga0214206_1000151 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	19551
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (82.14%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

19551

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (82.14%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100015110	F000857	GGAG	MDDNEDVKVNEEYYTKGILEGGIDGVFRHNDKLFNEVKSGTWSQTFKTANIDYKVGAIDGNRYVQYDQKNVEAVRGRCKELREFYKEHGTDNPFFAGTAHMMELPKCFAHEISSKWFNNRPWELIKQDKQDKILFYAIVNEYYSDFVVHPSGKIPVPYNPIIPTK
Ga0214206_100015113	F003521	AGGA	MKSLVLHIREFFNRRTRVEDSKKEANVNRRTLVIENGESASRLMRNEDFALLFNLYRFHLLERLEDCRSDPERIDNAHDVAGVRDFISFIEKTEYLGRVAIKTNT
Ga0214206_100015114	F004695	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVNPGVDYATAIITKCLMPNGKVNFEFERFSELDSEQSVQATEMVKYMINSKNDSYQIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAADKGLTVKRQNMRKIDVDLSGAAQDAMGQDQQENQMENISDSLNTHTIYRAQYKMTGFSTSVRIKHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKAQFPYVDIEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWLRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDANKHVFEFQPMQGNLAYVQSSMQRFEADKMAMIGMTSPSDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLIQYADDYNIQQLANVCAQGKPFMDAVSMNNYEFIDRKLINIDLALGFMSDENRLTRQQLIGQAQQAFAQSMMQLDPSVPELFAKVRRPYEDTLRVLGVKDVDAYLPTLDEAAKIMQAKAQKPPPATDLEIQSKTDLNKAKTQETMARSGLLAAQTKDIAVDDAFTAMAAKAGKLKAVEMD
Ga0214206_100015116	F006264	GGA	MEEPTNLFRQKLPAQSEVCARKALEWLQKDLQHEHALSPQDVYYLASAAQILLDIRDLYGKK
Ga0214206_100015117	F001059	AGG	MAYDIEALKADLPTAKELAQFVYDKTQISLDFVGKPKEDQYQVAKNALEGKKIPSDYMTDLNPYLDKKELIPEDEIKQLPPRSTELPSEESRIHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVMGPLEKMAIGKRINKFGQEQPEKYSWLDPRTSETLMRRADGTYTEQGRKLFAYCSGEKGGGIWPLIDRDLVNFTQKNVTDPWA
Ga0214206_100015118	F040590	N/A	MSGYGKIISGGARMTKGLTKGINDKLEEYAESHKDKAVLANSVRNVFNQNPLSDPHLNNINVKAKPKFTTPKLPAKI
Ga0214206_100015123	F012670	GAGG	MFDEIRPEGSIVSSEAKRADARARYAQKKAMKLATGEILPKIQETHNPAGRPKSIVNRVTEYGALFNKLNEERIAKGLSPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVQSISKDEEASADEALDDFLQAIRKV
Ga0214206_100015124	F001915	AGGAG	MEWTLAHPLSDAADIVWMADTFFGEEADGILKRDKAVFTKNVTIAATVQLFDKYREFLAVCRTPDERLLGFCWFDRGGYTTYASEEISNAKFHHVDLTLPAKTRVKLIHQMIDQHILWANMCGIPVICSTSIRAENEGFMKIHKKRGFTVNGSYAWMRTEEGMKCLMK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214206_1000151

Overview

Ecosystem & Geography

Associated Families

Sequences