NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1000154

Scaffold Ga0214206_1000154


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1000154 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)19423
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (84.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013852Metagenome / Metatranscriptome267N
F076796Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0214206_100015410F013852AGGAMARSTFSGPVLSGDNRFGPVRNVGYTDLVQTALLDFSVTSAGANYGGASGQFVASNGIPNSNAVIYTPQSGVFSNTGPTAASAPTADATNTVYRGVVFYLPYSSNITDVILDVGTIPKDNAGTPVAVSAIQPYVSNNFATSTGVYATFANISSPAAQRYTGTYVGSQLTNSNATLQDFQNLQPGQEPAWFSQVVVTLKMTTTAAGLSSGQVEVTIRYNPNDMNIGNSTTYPYGNFD
Ga0214206_10001544F076796N/AMKEKILDHLLKQVDAKVRSLEESLGTGVAKDYADYQKTCGQITGLLTVRLYMTDLKKNLENFDE
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