NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1000987

Scaffold Ga0214206_1000987


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1000987 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7058
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022833Metagenome212Y
F037627Metagenome167N
F061646Metagenome131Y
F061649Metagenome131Y
F063332Metagenome129Y
F102396Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214206_100098710F061649GGAGMRDQTDCHYPYENLCLRECEAGCRVRKTTWRKRTIREREDQELEDEAFARIPQHTYECKHLGVCNDRPQHCPDCPSNHA
Ga0214206_100098712F061646GAGGMKSRYIFDKVNQDITASIARQVDRDAPRPHAPTNDDLICALIFIVSVTLLILL
Ga0214206_100098714F063332AGGAMKTLKQAMTNQNELQAIKAFVRGLIAGITDTHTNPDLILDDYWNAWDETLDVNIWIDESDPQKYITTLYRVVDGVRDDETFQRLDYLEA
Ga0214206_10009873F102396AGGMLLFKTKRLERLEKEVLMLEELFKHALQRIANLEEARWGLKVDGTPKAKPGRKVKNERIS
Ga0214206_10009875F022833AGGAGMAYNSRPLIKKAVELQDSLVNKTEENKELKATIKDLHAQAEKDKQFLRQVQDESNNLELALKKCINSKAELNNQIEQLRDDLDKYTEMYARATLVVTALGEAVYFLTKESSRGE
Ga0214206_10009876F037627AGGMKPLICADCKWHIPSKQSSNVANYDRCKASEVINLVTGEAKYQYCESMRVYNADCGMDGKLFELNQAEETSDGV
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