NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1001097

Scaffold Ga0214206_1001097


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1001097 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6588
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010592Metagenome301Y
F046794Metagenome150N
F068376Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0214206_100109716F010592N/AVKPFSQYLHDVYDGPARKVVSDWVTMKWGLEVKDNPNKYGVDLICFRSGSPVGLLEVEVRQEGFDRHRTIHAAQRKDKLFREGLPTLFFAVTQDLSRAYWVKADLIANCPLIEVHNKYVSKGELFYDCPITMFKIADLTQIF
Ga0214206_100109717F068376GGAGMATNFKITGKTHESPKGHYVKESPHRIEKEVERLERKLDKHIAMPMEKAHHAEHGSSQKEAPLPNMRKY
Ga0214206_10010979F046794N/AMMGACKLNPVVVNKMPSDWCGQEIPAQYEVEVVPPAVEIVYDITTDEVKPKRGRKSANKGSDK

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