NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1001242

Scaffold Ga0214206_1001242


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1001242 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6050
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008423Metagenome333Y
F035305Metagenome172N
F090396Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0214206_100124210F035305N/AMNTLAIWEIAPTKSDIDALAQNVANELNEGTIKPEDVAVKVAVVEAFAKQLRAKSEEYIIDFLDKCPKGKYDHLGANLALKDSQTYDYAAYSEKWAELQTKIELLKAEQKEIEDNGKKFERGAIPLKSYKQSYTITLNK
Ga0214206_100124215F008423N/AMERLIYQGRQLKLHKRATCLLELLKAAQTRQTWHEKDLALWRRGTYDTPIRLMQKEEDILIKIARMNDVQKRILKSYQKLILELYEITDTFHLPINIFL
Ga0214206_10012426F090396AGCAGVKGSKGEVYNEMCRYKEKGEPLHLKVIELIPVSERLPALAKIYGIDKIAGVLSIAITKALSNFNLRVGMNPEQIAQLSFALIEEAESDQLAIQDILLFLDGFPKFRYGKVFDRMDMPTFFEMLEKYREERHQAYINGKEEAHAQFKSMGESNRTSQDIDKEANRNAMANYLKTK
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