NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1001753

Scaffold Ga0214206_1001753


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1001753 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4898
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051645Metagenome143Y
F061482Metagenome131Y
F078138Metagenome116N
F096494Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214206_100175314F061482AGGAGGMGYDSWLMSGAYANESEEIYIENRVPELLETEEFDPSDTSHMAEAISEASKEDQATIRDYIEQREWAKLGQKLYVMSFDYMEKFAEHRAQHEVEQGL
Ga0214206_100175316F051645AGGAMNNDRFYNPLIYLVKRYGSLNGACKALDISHQRISHWNKQKSIPDAWKVTLHEKYGVPYKSFFEQLDGAK
Ga0214206_10017532F078138GGAMIPAMRNANAPHIDFGFLRGFIPSNPHFMPSNIDMVLERRGVFLFGEWKREDEEMKQGQKILLTALAWHHTVIIITGYVDDKPHIGLIQKVTPAGNLTVIGEGEDDLISFLTGWYVEVERGIL
Ga0214206_10017539F096494AGGAMMNSKDLADYLESHVTPTIAIAGDITMDSIIKVLRKQQEDLEYMQDQFDRAIDFLAKCNGWSKNK
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Institute for Fundamental Biomedical Research
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