NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214175_1000457

Scaffold Ga0214175_1000457


Overview

Basic Information
Taxon OID3300021133 Open in IMG/M
Scaffold IDGa0214175_1000457 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)11390
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F029972Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0214175_100045713F029972N/AMSQRQERELEEEWPEAKRTIASGAKFEKGDLKTTAIYNVEFAVECKSTQNASYGISKSVWNTIKEHAQNRSWLARPILAVRLYGPTLQETEWGGQRECTPENLPVELDLIVMEKNDWLEFYEDYLRLKERYDRED
Ga0214175_100045717F021233GAGGLKEPSLAEEHDDKFGDLHEFVVRAFTWEAKPEEFDMLQTIEKMVEEFMREYLAPAEVIIAQFNSGTYMSDGEAERMFLNLQSAIVAVEEEVTRRYLKAQFSYYIWDDKYWEAYRKPVSGTQNDLTARARIETSADRKFYFVQYAAWRIVNDKVQSL
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