NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214171_1004866

Scaffold Ga0214171_1004866


Overview

Basic Information
Taxon OID3300021134 Open in IMG/M
Scaffold IDGa0214171_1004866 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2739
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031758Metagenome / Metatranscriptome181N
F040464Metagenome / Metatranscriptome161N
F043229Metagenome / Metatranscriptome156N
F096608Metagenome / Metatranscriptome104N
F105037Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214171_10048662F031758AGAAGMSANKSQEKELLIKNLFKLINEIFIVKPGVTFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHEIISLIDEVNTLDEMNLEKQRKTFRKILKTTKALRQTDQLWRMNPRVILEFLKWNSKTIMSAEQVSRKPREQVPLD
Ga0214171_10048663F043229N/AMTQKGVKLEIETIEECGCEPHECYCRHNKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICDLKKKIKRIDPEWILVNEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIELCQSINKLKIIHPDWEMDLEDSKNHYICRCCSCLEKRKMYQQTLDETRSEKSTPYKGSRNKFSN
Ga0214171_10048664F096608N/AMNPKIELVKEILQIIDTLTPMEIKTIPESVVLRLYQLKKRVKELDPSWEFNDPYNHYIFRILILLDALEVDETFSLEKHGKICQMMHREVRDIRRINSLWRMDTSLVVEFINSTPLKEEDREREKDKLPENLVDKKDLSP
Ga0214171_10048665F040464N/AMNKETRNYKNKVYTFKHRTMNPMVSPEWLRRGYAFVGQTQEHLKDILKELTLKMRTMTDKEIERDLRKRLKVTGDITLELSRVVGQGLEQKRTFKGLLGTLIETKNWALIKLILEVTEELKERNSSSPLLFSIAKEILRELQRIQAIIPIKELKQMETSLIDIQYWKLTRYLRI
Ga0214171_10048666F105037N/AMSTYKVVDFTTGAEDEEMVTSHLFHERDLALRGVTLILATIRDNTTLEENLGGYKELHKYIQILKKLDPKWRLVLYYIGNCIRLKHYSCDCHSFL
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