NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214171_1011422

Scaffold Ga0214171_1011422


Overview

Basic Information
Taxon OID3300021134 Open in IMG/M
Scaffold IDGa0214171_1011422 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1446
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012769Metagenome / Metatranscriptome277N
F014232Metagenome / Metatranscriptome264N
F030350Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0214171_10114221F030350N/AVLQPGPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYCLTPTFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKEKINFEITEVKKTSPYEYKDPREVDFKIPKIKNETKVVTRVRNPTYLDFLYRP
Ga0214171_10114222F014232N/AMSQEKSKIVDEATTKEDTLEGSSHKSHECTCTPSAEYEKATEIGSLTNLIRLVYSIPLVNGLISYKPLERIWNSKKVIRKIDPGWVLADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIRLKAIHPDWEMYLEDSKNHHFCKCLPCSEVKRRYQEMLDATSSEESSSEEENKT
Ga0214171_10114223F012769AGAAGMKFQDPKFKVRELVKDKFDPILKEEYQEEIARKLFNASIEVIRQSVNRITEQHYLPYSLEEKEDAVKEARVQVSEWKNRILIRRQEAKITRIDRALSKKILDMLAEYLRALEETDIAKRQSKLYHVDAVAAITELQINRKFASPERKPVKRKIH
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