Scaffold Ga0214167_1004493

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214167_1004493

Scaffold Ga0214167_1004493

Overview

Basic Information
Taxon OID	3300021136 Open in IMG/M
Scaffold ID	Ga0214167_1004493 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4551
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6864	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078044	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214167_10044939	F078044	N/A	MRKYIKPALYVAVFGTFVFALTGCASVSPKVVIDGVLGRYPHFDSNEYNRAVNVEIEAKNLAKDPASISIFISDVDNLRLYVAGRPYNERIIKEIDLLEKVTKELQVRLEKGKPSPAYITNKCDDIVELSDNIRKSIGVEKL

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