NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214166_1000149

Scaffold Ga0214166_1000149


Overview

Basic Information
Taxon OID3300021139 Open in IMG/M
Scaffold IDGa0214166_1000149 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36058
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (84.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F034419Metagenome174Y
F037510Metagenome167N
F072911Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0214166_100014918F000324AGGAMTTPIAPHHQLTYDGAVLNIFHANKGEGLPRHEHTWAHATMCHAGSCIVRKEGRELVMTKETQPVNLVANEWHEIEALEDGTVFVNVFAEGKY
Ga0214166_100014921F034419GAGMYNEGKALVRDVQKTVGEVKQIGKEVKGIWGWITSIFAEPVEEKKTLQDIHPKNQKKEKIKFDEQVLYAEIGDQLVSFFRNYKACSDAIHEEESKIEQIYDPDGETYERAIRLVMAKTQLEQMRVELTEYMIYHVPPELKDLYSRVNEMIGSVKTKQEMARKAELKKKAQRLAEAREAADRAWLMGACTVVVIFIAIYLAGLMWAINRASHGGM
Ga0214166_100014922F072911AGGAVGNKSSESWGYVVAIIVLALLFVLILPVIGIMYMDIHQERILIANDLKRIEKLKKELEAQKDK
Ga0214166_100014944F037510GGAMIKLTYEHICDGCKKTLDTEVYECSDYPGMEFPKTHRMFSFHWRGLNAQLCKDCAAPLYEAQRQTMEIIIANRGQE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.