NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214166_1006004

Scaffold Ga0214166_1006004


Overview

Basic Information
Taxon OID3300021139 Open in IMG/M
Scaffold IDGa0214166_1006004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3871
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F026556Metagenome / Metatranscriptome197Y
F063276Metagenome129Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0214166_100600410F063276AGGAMQDSTFRQNLDFILALVISIGAFVFVIWWNIENPHMTVRYDCSISEISSDYPIEVKEGCRKLRAEKILQLPK
Ga0214166_10060044F009462AGGAGMELHESVRDTFKTMVIKEHEGFRLTLNKHEVISPKGLFSIDMVQESLKDGEVVDIQTYNFFMTRDEMATLASALTA
Ga0214166_10060046F026556GGAGGMTSALIRLLFGISLIVIAVAFGPIIGIWALNTLFPQYLNIPLTWQTWLAFNVLFGGSYARLKK
Ga0214166_10060049F070810GGCGGMLFLVRAIIKLETVNESWEIKILWHNQDGKWWNEACADVVEVFGLPGDRFTSHPYEDCMLFRFKSKKDYQLCKILLSDRI
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