NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214168_1004027

Scaffold Ga0214168_1004027


Overview

Basic Information
Taxon OID3300021140 Open in IMG/M
Scaffold IDGa0214168_1004027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5310
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013085Metagenome274Y
F015729Metagenome / Metatranscriptome252Y
F016809Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0214168_10040272F013085N/AMDILSEIIEISDEMVNSLEEDGFFEEHQFIDRIPLKRALQIAMQRKWEQEDDMLLTDKEFLEVCQSVSNKSIGKTIEDLVDKGALNMSVNEDGEILYSANKDFQFDKDEDE
Ga0214168_10040273F016809N/AMSKINNEFMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKNVQSHSIFPDEVQYDDEYYKSSYLPTPDEEAENYKQTKQNGHT
Ga0214168_10040278F015729N/AMKRPVNFETIDASDFEIYGHSFHTDLDQLQNKEKSSWVWVFPHGGILGDYVVLFELKWEHDCYSMKKCILGEGNTGNYIFQDHLLSSDMMQTKDDFVSHIARTIADEMNVGTFQN
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