NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214168_1008669

Scaffold Ga0214168_1008669


Overview

Basic Information
Taxon OID3300021140 Open in IMG/M
Scaffold IDGa0214168_1008669 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3308
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F010320Metagenome / Metatranscriptome305Y
F018537Metagenome234Y
F018924Metagenome232N
F059953Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0214168_10086692F010320N/AMNYYQLIAFAQQLKKENMKINNDAFINDAYNEESKLYGEFMDEVKLHDYSYMMSDDHNVYMNGRNHEKQIEEKLHALINICRYDGHDLLDEVISAVPQRYNDVDVHGNDLTHRVIRGWFKPYVFDNFEL
Ga0214168_10086694F059953N/AMNLELTLMELNDLYYVVSKGVESHKELVEIAKRTTPELEKYFEKELSKSVQLLDKIQTVLYNEYQVMDDEPEYDSAGFTEDDRMQEVKSEKKLFTLNNDR
Ga0214168_10086695F002092N/AMRTTNQKAMEYLKGNPIVANFINKLNIQRKDHYVKADMVSQYKELVVEVGQKYIRLWQGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL
Ga0214168_10086697F018537N/AMASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWGRSRQNDVPWRVAQYIDIYLHAANPNRMRISQKKGMERKNLSLSDNNVIIARTLGSMGYSLADGVKHTQQSHSSSPLMAIMKLQYQTQMKDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNKVSFSQLKSHYDIVMRGNATIQKGGSFIHHLHSLIDARNAIGRRCGRYLYKDTDGKYKVSNI
Ga0214168_10086698F018924N/AMENIKLVTYKLKQMTNSEKAIAQLFGVLCSIVKSEHTPQATKQATISTFQHLIGEEGSPFLNDELIQLSTAMDVEMQSIVRQLNGDRILNNVLTNNINLN
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