NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214168_1014281

Scaffold Ga0214168_1014281


Overview

Basic Information
Taxon OID3300021140 Open in IMG/M
Scaffold IDGa0214168_1014281 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2366
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F008552Metagenome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0214168_10142815F001561AGGAGVQSREQKLVYLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMYDYHDADSWENMIWLMWSMAINKKDTVWLFQAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPSSTHHSLISVCDKAGDRVKAIGYCKMTLARFPNDPYTKSKLEVLTKL
Ga0214168_10142817F008552N/ALTIRRYNMSVMIISFEASASEDTTLFGYFSMEYDPEFFSDIRENLTDIPKNKPLAFKLDTDNVKLLQGAFHNIRRIICIPDIEKNKFTYVFKRNFESGTAKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDARFIDTIQNQYIKHQGNMVN
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