NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214163_1001457

Scaffold Ga0214163_1001457


Overview

Basic Information
Taxon OID3300021141 Open in IMG/M
Scaffold IDGa0214163_1001457 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10148
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003690Metagenome / Metatranscriptome473Y
F004840Metagenome / Metatranscriptome421Y
F006984Metagenome / Metatranscriptome360Y
F009143Metagenome / Metatranscriptome322Y
F029439Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0214163_100145715F004840GAGMYKITCAYDSNAPHWSAEYENEFGAWENFFLFTDWGMANEYSTVNLYTPAGKCYTKVFYRSGMVAVK
Ga0214163_10014572F029439GGAGMTNIVLEPSHPMASSNTGDNRLFRNSVGNYISRKAYLELLSTKEGCVSHKYLSPNESAWLMGVR
Ga0214163_100145732F006984AGGAMPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISTMGFPTKIEQVTYSNPVF
Ga0214163_10014574F009143GAGGMMTKWDTIQADVADSYVYLDEEEMYNKALEEGLIEFGSDEYDEDEMSKSLTLDWND
Ga0214163_10014575F003690GGAMIPTGFELSITNEYGFEFDSFLGAIYLPWHTILITTALLIAYKIYKRKKNK
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Institute for Fundamental Biomedical Research
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