NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214163_1010095

Scaffold Ga0214163_1010095


Overview

Basic Information
Taxon OID3300021141 Open in IMG/M
Scaffold IDGa0214163_1010095 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3163
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F009266Metagenome / Metatranscriptome320Y
F033420Metagenome / Metatranscriptome177Y
F099190Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0214163_10100951F002406GGAMSDRLRDELSSEYDDDTKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDDKE
Ga0214163_10100953F002398AGGMMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDYPRVNIIEKSKFDFFAYLDTIGIEHTQVGSYYFFNRKPK
Ga0214163_10100954F009266AGGAMTDKERKILDKEIQYLCEQQDRVKAIREYTGINPGYTFLREVETIESLYKSVLESRKYDKSTYFSAATSGWYVVYLRDKKTYKKDEKFKIKIFHTFVWTDNLD
Ga0214163_10100955F099190N/AMEAKTISLTYHITERHGYIEVPLSLLRKLKISKLISEYSKTLRRTVFVEEDGDATLLTKRLKLEGYEVILKESERRKQDFFDCLPKFNDAHCRDKQFSGFTSDYEFKINHIVTLPEKYKVNENVLSAPDEDDITIEVTFSRNGQKLKEQALQRLGIKPSLFFQCESERYYED
Ga0214163_10100958F033420AGGAMSDTPKSFLELDDAPVKIQPNASVFTSVASLQVAEGSTAKQDSNGNWFNAIGLQSTSTHRHVAKVWQDKCTPFSDFVSSVKSQVEFKEDIVKKESEIRLKDANTLVDGTPLTKSGMNSLRMFTDIPSSMVSFLSE
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