NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214163_1017162

Scaffold Ga0214163_1017162


Overview

Basic Information
Taxon OID3300021141 Open in IMG/M
Scaffold IDGa0214163_1017162 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2241
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021979Metagenome216Y
F041197Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0214163_10171621F021979N/AMLTIENINILNSKFAGTAEWQIGEMFIGEQNYIFQIHKRVGEWIIGGVKHSELTIRLHRVKVIDRYVMETGLVKQNYHGRSAYSIDRMKTITDFTMCLDNHIKTIVR
Ga0214163_10171625F041197GGAGGMSITLSNDSSHLTMKGSSKAIIKSSIKIVGTNSVLPIEIVGDFKDIPQNLHQLYMQSMLASYGSVNVHNNTEPEPKTIKEQKSEWRLNRLVELISKAISK
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