NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214163_1044464

Scaffold Ga0214163_1044464


Overview

Basic Information
Taxon OID3300021141 Open in IMG/M
Scaffold IDGa0214163_1044464 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1182
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015339Metagenome255Y
F020904Metagenome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0214163_10444641F020904N/AHHQNKDKTWKAAKLDKTNFPYTLDPGEDYLPYAIENKHIGSNFDDFLKTNNIELKRDINWAVKMLNAGKMMSREGNPSLTLFPKKYDHAESTITTADLFAEDWVVVPTKLFKDVLDDLNSGKTIRRKSWHPDWGVGKYSRYGKIIYLDLIADDWEVVDVVAEVDKNQQDIKDGKY
Ga0214163_10444642F015339GAGMEADPKILSEQYIRGRIYSFVKFRKYLQEIAYIFCEEFQYDKDDIIEVSLSDDGKTVWIHFDSGTIGFASELLWDKNVRETFKKYFEVD
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