NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179584_1077700

Scaffold Ga0179584_1077700


Overview

Basic Information
Taxon OID3300021151 Open in IMG/M
Scaffold IDGa0179584_1077700 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)682
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004385Metagenome / Metatranscriptome440Y
F004491Metagenome / Metatranscriptome436Y

Sequences

Protein IDFamilyRBSSequence
Ga0179584_10777001F004385AGGMFQPFKSLLAASLLLGVALTSAVAAEREDVRKAINLMTSVKMPFPEGLSRNRARTERVWLEREGATTGCIRLEDRRWCYDYIAPKGNRAEMLRIRNEPSRGVYIGALYHYVVDYDLDGLIDVGS
Ga0179584_10777002F004491N/ALRIRKEPVPGLLAGQPYQYVDDFDLDGTIDIGSTTTLEGEPYAPVGRISQFFYRATSRGDQFRGDFQAVYDEGIQVALKYLGE

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