NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210406_10000012

Scaffold Ga0210406_10000012


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10000012 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)317262
Total Scaffold Genes291 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)216 (74.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004258Metagenome / Metatranscriptome446Y
F004611Metagenome / Metatranscriptome431Y
F006713Metagenome / Metatranscriptome366Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_10000012237F004258GAGMLNASNLLPMQSDEILDDVHIRILRVTEDMRSIQQALNCAAMQAPNDPELMEALCQLPELESLHLLKTALDQMRHFLWFYMQVMTNGSEEGERLRESIRQKPSDSMTVSPRIAAAEKFKRAADAALLQMLSDGKTRKPN
Ga0210406_10000012241F004611N/AVPDTTSTTSSSKSRRWTVIASGLLCGLLALVVIYPKSNAFHSPLAVVVVAAIGLVAVMLQLRFYNRERSRPVRAPLWLNILGIVFALAALFADALHLSSDMAQLMALGAIGSFSISSAVVLHAFRKRRAE
Ga0210406_1000001264F006713N/AVFDVTSVLSNAAALWNLVLLLAAIVVLIGFLYGFVFRRLVRKRRIAGARDRRMLREAAERESDRTN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.